publication-2019

LIST OF PUBLICATIONS  (2019)

[1]     Prajapati B, Fatma M, Fatima M, Khan MT, Sinha S, Seth PK. Identification of lncRNAs Associated With Neuroblastoma in Cross-Sectional Databases: Potential Biomarkers. Front Mol Neurosci. 2019 Dec 12;12:293. doi: 10.3389/fnmol.2019.00293. eCollection 2019. PubMed PMID: 31920530; PubMed Central PMCID: PMC6920248.  

[2]     Pandey G, Bakhshi S, Kumar M, Thakur B, Jain P, Kaur P, Chauhan SS. Prognostic and therapeutic relevance of cathepsin B in pediatric acute myeloid leukemia. Am  J Cancer Res. 2019 Dec 1;9(12):2634-2649. eCollection 2019. PubMed PMID: 31911851; PubMed Central PMCID: PMC6943344.  

[3]     Gupta N, Sharma A, Sharma A. Emerging biomarkers in Multiple Myeloma: A review. Clin Chim Acta. 2019 Dec 31;503:45-53. doi: 10.1016/j.cca.2019.12.026. [Epub ahead of print] Review. PubMed PMID: 31901479.  

[4]     Dhar R, Pethusamy K, Singh S, Mukherjee I, Seethy A, Sengupta B, Srivastava T, Sarkar S, Mandal V, Karmakar M, Gupta S, Ghosh A, Karmakar S. Draft genome of Ompok bimaculatus (Pabda fish). BMC Res Notes. 2019 Dec 26;12(1):825. doi: 10.1186/s13104-019-4867-y. PubMed PMID: 31878964; PubMed Central PMCID: PMC6933649.  

[5]     Mehra S, Panwar R, Thakur B, Yadav R, Kumar M, Singh R, Dash NR, Sahni P, Chauhan SS. Expression and Clinical Implications of Cysteine Cathepsins in Gallbladder Carcinoma. Front Oncol. 2019 Nov 22;9:1239. doi: 10.3389/fonc.2019.01239. eCollection 2019. PubMed PMID: 31824841; PubMed Central  PMCID: PMC6883407.  

[6]     Khandelwal M, Anand V, Appunni S, Seth A, Singh P, Mathur S, Sharma A. RASSF1A-Hippo pathway link in patients with urothelial carcinoma of bladder: plausible therapeutic target. Mol Cell Biochem. 2020 Jan;464(1-2):51-63. doi: 10.1007/s11010-019-03648-y. Epub 2019 Nov 21. PubMed PMID: 31754973.  

[7]     Pathak D, Srivastava AK, Padma MV, Gulati S, Rajeswari MR. Quantitative Proteomic and Network Analysis of Differentially Expressed Proteins in PBMC of Friedreich's Ataxia (FRDA) Patients. Front Neurosci. 2019 Oct 14;13:1054. doi: 10.3389/fnins.2019.01054. eCollection 2019. PubMed PMID: 31680804; PubMed Central PMCID: PMC6802492.  

[8]     Panda S, Tiwari A, Luthra K, Sharma SK, Singh A. Association of Fok1 VDR polymorphism with Vitamin D and its associated molecules in pulmonary tuberculosis patients and their household contacts. Sci Rep. 2019 Oct 24;9(1):15251. doi: 10.1038/s41598-019-51803-8. PubMed PMID: 31649297; PubMed Central PMCID: PMC6813333.  

[9]     Saini C, Srivastava RK, Kumar P, Ramesh V, Sharma A. A distinct double positive IL-17A(+)/F(+) T helper 17 cells induced inflammation leads to IL17 producing neutrophils in Type 1 reaction of leprosy patients. Cytokine. 2020 Feb;126:154873. doi: 10.1016/j.cyto.2019.154873. Epub 2019 Oct 16. PubMed PMID: 31629113.  

[10] Singh MK, Singh L, Chosdol K, Pushker N, Saini N, Meel R, Bakhshi S, Sen S, Kashyap S. Differential expression of p52 and RelB proteins in the metastatic and non-metastatic groups of uveal melanoma with patient outcome. J Cancer Res Clin Oncol. 2019 Dec;145(12):2969-2982. doi: 10.1007/s00432-019-03052-5. Epub 2019 Oct 14. PubMed PMID: 31612319.  

[11] Mishra N, Mohata M, Narang R, Lakshmy R, Hazarika A, Pandey RM, Das N, Luthra K. Altered Expression of Complement Regulatory Proteins CD35, CD46, CD55, and CD59 on Leukocyte Subsets in Individuals Suffering From Coronary Artery Disease.  Front Immunol. 2019 Aug 29;10:2072. doi: 10.3389/fimmu.2019.02072. eCollection 2019. PubMed PMID: 31555286; PubMed Central PMCID: PMC6727527.  

[12] Singh MK, Singh L, Chosdol K, Pushker N, Meel R, Bakhshi S, Sen S, Kashyap S. Clinicopathological relevance of NFκB1/p50 nuclear immunoreactivity and its relationship with the inflammatory environment of uveal melanoma. Exp Mol Pathol. 2019 Dec;111:104313. doi: 10.1016/j.yexmp.2019.104313. Epub 2019 Sep 15. PubMed PMID: 31533021.  

[13] Gupta N, Kumar R, Seth T, Garg B, Sharma A. Targeting of stromal versican by  miR-144/199 inhibits multiple myeloma by downregulating FAK/STAT3 signalling. RNA Biol. 2020 Jan;17(1):98-111. doi: 10.1080/15476286.2019.1669405. Epub 2019 Sep 29. PubMed PMID: 31532704; PubMed Central PMCID: PMC6948970.  

[14] Anand V, Khandelwal M, Appunni S, Gupta N, Seth A, Singh P, Mathur S, Sharma  A. CD44 splice variant (CD44v3) promotes progression of urothelial carcinoma of bladder through Akt/ERK/STAT3 pathways: novel therapeutic approach. J Cancer Res  Clin Oncol. 2019 Nov;145(11):2649-2661. doi: 10.1007/s00432-019-03024-9. Epub 2019 Sep 16. PubMed PMID: 31529191.  

[15] Mochan S, Dhingra MK, Gupta SK, Saxena S, Arora P, Yadav V, Rani N, Luthra K, Dwivedi S, Bhatla N, Dhingra R. Status of VEGF in preeclampsia and its effect on  endoplasmic reticulum stress in placental trophoblast cells. Eur J Obstet Gynecol Reprod Biol X. 2019 Jun 21;4:100070. doi: 10.1016/j.eurox.2019.100070. eCollection 2019 Oct. PubMed PMID: 31517301; PubMed Central PMCID: PMC6728727.  

[16] Mann M, Kumar S, Chauhan SS, Bhatla N, Kumar S, Bakhshi S, Gupta R, Sharma A, Kumar L. Correction: PARP-1 inhibitor modulate β-catenin signaling to enhance cisplatin sensitivity in cancer cervix. Oncotarget. 2019 Jul 30;10(46):4802. doi: 10.18632/oncotarget.27101. eCollection 2019 Jul 30. PubMed PMID: 31413820; PubMed Central PMCID: PMC6677665.  

[17] Sharma A, Sharma U, Jagannathan NR, Ray R, Rajeswari MR. Effect of Doxorubicin on Squamous Cell Carcinoma of Skin: Assessment by MRI Relaxometry at  4.7T. Cancer Invest. 2019;37(8):339-354. doi: 10.1080/07357907.2019.1651327. Epub 2019 Aug 14. PubMed PMID: 31412717.  

[18] Mann M, Kumar S, Sharma A, Chauhan SS, Bhatla N, Kumar S, Bakhshi S, Gupta R, Kumar L. PARP-1 inhibitor modulate β-catenin signaling to enhance cisplatin sensitivity in cancer cervix. Oncotarget. 2019 Jul 2;10(42):4262-4275. doi: 10.18632/oncotarget.27008. eCollection 2019 Jul 2. Erratum in: Oncotarget. 2019 Jul 30;10(46):4802. PubMed PMID: 31303961; PubMed Central PMCID: PMC6611509.  

[19] Panda S, Tiwari A, Luthra K, Sharma SK, Singh A. Status of vitamin D and the  associated host factors in pulmonary tuberculosis patients and their household contacts: A cross sectional study. J Steroid Biochem Mol Biol. 2019 Oct;193:105419. doi: 10.1016/j.jsbmb.2019.105419. Epub 2019 Jun 27. PubMed PMID:  31255688.  

[20] Singh A, Pramanik A, Acharya P, Makharia GK. Non-Invasive Biomarkers for Celiac Disease. J Clin Med. 2019 Jun 21;8(6). pii: E885. doi: 10.3390/jcm8060885. Review. PubMed PMID: 31234270; PubMed Central PMCID: PMC6616864.  

[21] Mishra N, Makhdoomi MA, Sharma S, Kumar S, Dobhal A, Kumar D, Chawla H, Singh R, Kanga U, Das BK, Lodha R, Kabra SK, Luthra K. Viral Characteristics Associated with Maintenance of Elite Neutralizing Activity in Chronically HIV-1 Clade C-Infected Monozygotic Pediatric Twins. J Virol. 2019 Aug 13;93(17). pii: e00654-19. doi: 10.1128/JVI.00654-19. Print 2019 Sep 1. PubMed PMID: 31217240; PubMed Central PMCID: PMC6694815.  

[22] Kumar R, Parray HA, Shrivastava T, Sinha S, Luthra K. Phage display antibody  libraries: A robust approach for generation of recombinant human monoclonal antibodies. Int J Biol Macromol. 2019 Aug 15;135:907-918. doi: 10.1016/j.ijbiomac.2019.06.006. Epub 2019 Jun 3. Review. PubMed PMID: 31170490.  

[23] Dhar R, Seethy A, Pethusamy K, Singh S, Rohil V, Purkayastha K, Mukherjee I,  Goswami S, Singh R, Raj A, Srivastava T, Acharya S, Rajashekhar B, Karmakar S. De novo assembly of the Indian blue peacock (Pavo cristatus) genome using Oxford Nanopore technology and Illumina sequencing. Gigascience. 2019 May 1;8(5). pii: giz038. doi: 10.1093/gigascience/giz038. PubMed PMID: 31077316; PubMed Central PMCID: PMC6511069.  

[24] Singh MK, Singh L, Pushker N, Saini N, Meel R, Chosdol K, Bakhshi S, Sen S, Venkatesh P, Chawla B, Kaur J, Kashyap S. Identification of canonical NFκB (C-NFκB) pathway in uveal melanoma and their relation with patient outcome. Clin  Exp Metastasis. 2019 Jun;36(3):271-290. doi: 10.1007/s10585-019-09969-y. Epub 2019 May 8. PubMed PMID: 31069565.  

[25] Bhardwaj M, Sen S, Chosdol K, Bakhshi S, Pushker N, Sharma A, Kashyap S, Bajaj MS, Singh VK. Vimentin overexpression as a novel poor prognostic biomarker  in eyelid sebaceous gland carcinoma. Br J Ophthalmol. 2019 Apr 2. pii: bjophthalmol-2018-313285. doi: 10.1136/bjophthalmol-2018-313285. [Epub ahead of print] PubMed PMID: 30940620.  

[26] Gupta N, Kumar R, Seth T, Garg B, Sati HC, Sharma A. Clinical significance of circulatory microRNA-203 in serum as novel potential diagnostic marker for multiple myeloma. J Cancer Res Clin Oncol. 2019 Jun;145(6):1601-1611. doi: 10.1007/s00432-019-02896-1. Epub 2019 Mar 19. PubMed PMID: 30891618.  

[27] Pathak D, Srivastava AK, Gulati S, Rajeswari MR. Assessment of cell-free levels of iron and copper in patients with Friedreich's ataxia. Biometals. 2019 Apr;32(2):307-315. doi: 10.1007/s10534-019-00186-4. Epub 2019 Mar 14. PubMed PMID: 30874991.  

[28] Das D, Akhtar S, Kurra S, Gupta S, Sharma A. Emerging role of immune cell network in autoimmune skin disorders: An update on pemphigus, vitiligo and psoriasis. Cytokine Growth Factor Rev. 2019 Feb;45:35-44. doi: 10.1016/j.cytogfr.2019.01.001. Epub 2019 Feb 8. Review. PubMed PMID: 30773437.  

[29] Appunni S, Anand V, Khandelwal M, Gupta N, Rubens M, Sharma A. Small Leucine  Rich Proteoglycans (decorin, biglycan and lumican) in cancer. Clin Chim Acta. 2019 Apr;491:1-7. doi: 10.1016/j.cca.2019.01.003. Epub 2019 Jan 7. Review. PubMed PMID: 30629950.  

[30] Singh V, Guleria P, Malik PS, Mohan A, Thulkar S, Pandey RM, Luthra K, Arava  S, Ray R, Jain D. Epidermal growth factor receptor (EGFR), KRAS, and BRAF mutations in lung adenocarcinomas: A study from India. Curr Probl Cancer. 2019 Oct;43(5):391-401. doi: 10.1016/j.currproblcancer.2018.12.003. Epub 2018 Dec 17.  PubMed PMID: 30591192; PubMed Central PMCID: PMC6579716.  

[31] Tiwari V, Rajeswari MR, Tiwari M. Proteomic analysis of iron-regulated membrane proteins identify FhuE receptor as a target to inhibit siderophore-mediated iron acquisition in Acinetobacter baumannii. Int J Biol Macromol. 2019 Mar 15;125:1156-1167. doi: 10.1016/j.ijbiomac.2018.12.173. Epub 2018 Dec 20. PubMed PMID: 30579900.  

[32] Prajapati B, Fatma M, Maddhesiya P, Sodhi MK, Fatima M, Dargar T, Bhagat R, Seth P, Sinha S. Identification and epigenetic analysis of divergent long non-coding RNAs in multilineage differentiation of human Neural Progenitor Cells. RNA Biol. 2019 Jan;16(1):13-24. doi: 10.1080/15476286.2018.1553482. Epub 2018 Dec 27. PubMed PMID: 30574830; PubMed Central PMCID: PMC6380324.  

[33] Kumar S, Panda H, Makhdoomi MA, Mishra N, Safdari HA, Chawla H, Aggarwal H, Reddy ES, Lodha R, Kumar Kabra S, Chandele A, Dutta S, Luthra K. An HIV-1 Broadly Neutralizing Antibody from a Clade C-Infected Pediatric Elite Neutralizer Potently Neutralizes the Contemporaneous and Autologous Evolving Viruses. J Virol. 2019 Feb 5;93(4). pii: e01495-18. doi: 10.1128/JVI.01495-18. Print 2019 Feb 15. PubMed PMID: 30429339; PubMed Central PMCID: PMC6364018.  

[34] Kumar R, Kumari R, Khan L, Sankhyan A, Parray HA, Tiwari A, Wig N, Sinha S, Luthra K. Isolation and Characterization of Cross-Neutralizing Human Anti-V3 Single-Chain Variable Fragments (scFvs) Against HIV-1 from an Antigen Preselected Phage Library. Appl Biochem Biotechnol. 2019 Mar;187(3):1011-1027. doi: 10.1007/s12010-018-2862-8. Epub 2018 Aug 28. PubMed PMID: 30151637.  

[35] Jayasundar R, Ghatak S, Makhdoomi MA, Luthra K, Singh A, Velpandian T. Challenges in integrating component level technology and system level information from Ayurveda: Insights from NMR phytometabolomics and anti-HIV potential of select Ayurvedic medicinal plants. J Ayurveda Integr Med. 2019 Apr - Jun;10(2):94-101. doi: 10.1016/j.jaim.2017.06.002. Epub 2018 Jan 3. PubMed PMID:  29306573; PubMed Central PMCID: PMC6598850.

[36] Ghosh-Jerath S, Downs S, Singh A, Paramanik S, Goldberg G, Fanzo J. Innovative matrix for applying a food systems approach for developing interventions to address nutrient deficiencies in indigenous communities in India: a study protocol. BMC Public Health. 2019 Jul 15;19(1):944. doi:10.1186/s12889-019-6963-2. PubMed PMID: 31307415; PubMed Central PMCID:PMC6631988.

[37] Tyagi A, Pramanik R, Bakhshi R, Singh A, Vishnubhatla S, Bakhshi S. Expression of mitochondrial genes predicts survival in pediatric acute myeloid leukemia. Int J Hematol. 2019 Aug;110(2):205-212. doi: 10.1007/s12185-019-02666-2. Epub 2019 May 22. PubMed PMID: 31119613.

[38] Vincent V, Thakkar H, Aggarwal S, Mridha AR, Ramakrishnan L, Singh A.ATP-binding cassette transporter A1 (ABCA1) expression in adipose tissue and its modulation with insulin resistance in obesity. Diabetes Metab Syndr Obes. 2019 Feb 25;12:275-284. doi: 10.2147/DMSO.S186565. eCollection 2019. Erratum in:Diabetes Metab Syndr Obes. 2019 Dec 11;12:2633. PubMed PMID: 30881070; PubMed Central PMCID: PMC6395069.

[39] Kathpalia P, Nag TC, Chattopadhyay P, Sharma A, Bhat MA, Roy TS, Wadhwa S. In ovo Sound Stimulation Mediated Regulation of BDNF in the Auditory Cortex and Hippocampus of Neonatal Chicks. Neuroscience. 2019 Jun 1;408:293-307. doi: 10.1016/j.neuroscience.2019.04.014. Epub 2019 Apr 24. PubMed PMID: 31026564

[40] Singh RK, Kumar S, Tomar MS, Verma PK, Singh SP, Gautam PK, Acharya A. Classical Protein Kinase C: a novel kinase target in breast cancer. Clin Transl Oncol. 2019 Mar;21(3):259-267. doi: 10.1007/s12094-018-1929-x. Epub 2018 Jul 30. Review. PubMed PMID: 30062522.

[41] Abhyankar YS, Dev S, Sarun OS, Saxena A, Joshi R, Darbari H, Sajish C, Sonavane UB, Gavane V, Deshpande A, Dixit T, Harsh R, Badwe R, Rath GK, Laskar S, Faddegon B, Perl J, Paganetti H, Schuemann J, Srivastava A, Obcemea C, Nath AK, Sharma A, Buchsbaum J. Monte Carlo Processing on a Chip (MCoaC)-preliminary experiments toward the realization of optimal-hardware for TOPAS/Geant4 to drive discovery. Phys Med. 2019 Aug;64:166-173. doi: 10.1016/j.ejmp.2019.06.016. Epub 2019 Jul 16. PubMed PMID: 31515016

[42] Kundu S. Insights into the mechanism(s) of digestion of crystalline cellulose by plant class C GH9 endoglucanases. J Mol Model. 2019 Jul 23;25(8):240. doi: 10.1007/s00894-019-4133-1. PubMed PMID: 31338614.