Dr. Bhupendra Kumar Verma's Lab
(Laboratory of Molecular Biology & Virology)
Investigator Profile Education and Experience Fellowships and Awards Select Publications Lab Members

 Publications

Google Scholar ID: https://scholar.google.com/citations?user=VkkZ9xAAAAAJ&hl=en
Scopus ID: https://orcid.org/0000-0003-1731-5335

  1. Madhry D, Roy R, Verma B. Biotin-Based Northern Blotting (BiNoB): A Cost-Efficient Alternative for Detection of Small RNAs. Current Protocols. Dec;4(12):e70065.
    DOI: 10.1002/cpz1.70065

  2. Madhry, D., Kumari, K., Meena, V., Roy, R., & Verma, B. (2024). Unravelling tRNA Fragments in DENV Pathogenesis: Insights from RNA Sequencing. Scientific Reports, 14(1), 18357.
    DOI: https://doi.org/10.1038/s41598-024-69391-7

  3. Sinha, S., Singh, K., Ravi Kumar, Y.S., Roy, R., Phadnis, S., Meena, V., Bhattacharyya, S. and Verma, B. (2024). Dengue virus pathogenesis and host molecular machineries. Journal of Biomedical Science, 31(1), p.43.
    DOI: https://doi.org/10.1186/s12929-024-01030-9

  4. Kumari, K., Afroj, S., Madhry, D., Verma, Y., Kairo, A, K., Thakar, A., Sikka, K., Verma, H., & Verma, B. (2024). Comprehensive Analysis of Juvenile Nasopharyngeal Angiofibromas via Whole Exome Sequencing. Genes, Chromosome and Cancer,
    DOI: 10.1002/gcc.23265. DOI: https://doi.org/10.1002/gcc.23265

  5. Basu, V., Shabnam., Murghai, Y., Ali, M., Sahu, S., Verma, B. K., & Seervi, M. (2024). ONC212, alone or in synergistic conjunction with Navitoclax (ABT-263), promotes cancer cell apoptosis via unconventional mitochondrial-independent caspase-3 activation. Cell Communication and Signaling , 22(1), 1-20. DOI: https://doi.org/10.1186/s12964-024-01817-1

  6. Sankar, A., Ravi Kumar Y,S., Singh, A., Roy, R., Shukla, R., & Verma, B. (2024). Next-Generation Therapeutics for Rare Genetic Disorders. Mutagenesis, 39(1), 157-171.
    DOI: https://doi.org/10.1093/mutage/geae002

  7. Madhry, D., Malvankar, S., Phadnis, S., Srivastava, R. K., Bhattacharyya, S., & Verma, B. (2023). Synergistic correlation between host angiogenin and Dengue virus replication. RNA biology, 20(1), 805-816.
    DOI: https://doi.org/10.1080/15476286.2023.2264003

  8. Malvankar, S., Singh, A., Ravi Kumar Y,S., Sahu, S., Shah, M., Murghai, Y., Seervi, M., Srivastava, R, K., & Verma, B. (2023). Modulation of various host cellular machinery during COVID-19 infection Reviews in Medical Virology, e2481.
    DOI: https://doi.org/10.1002/rmv.2481

  9. Singh, A., Pandey, K.K., Kumar, S., Srivastava, R. K., & Verma, B. (2023). The SARS CoV-2 UTR’s Intrudes host RBPs and Modulates Cellular Splicing Advances in Virology. Apr 5;2023.
    DOI: https://doi.org/10.1155/2023/2995443

  10. Rai S, Bharti PS, Singh R, Rastogi S, Rani K, Sharma V, Gorai PK, Rani N, Verma BK , Reddy TJ, Modi GP, Inampudi KK, Pandey HC, Yadac S, Rajan R, Nikolajeff F, and Kumar S.(2023) Circulating plasma miR-23b-3p as a biomarker target for idiopathic Parkinson's disease: comparison with small extracellular vesicle miRNA. Frontiers in Neuroscience. 2023;17.
    DOI: https://doi.org/10.3389/fnins.2023.1174951

  11. Singh, A., Malvankar, S., Kumar, Y. R., Seervi, M., Srivastava, R. K., & Verma, B. (2022). Role of various non-coding RNAs in EMT, cancer, and metastasis: Recent trends and future perspective. Advances in Cancer Biology-Metastasis, 100039.
    DOI: https://doi.org/10.1016/j.adcanc.2022.100039

  12. Siddappa, R. Y., Aditya Rao, S. J., Usha, B. M., Verma, B., & Mahadevappa, P. (2022). Anti-proliferative Activity of Labdane Diterpenes Isolated from Polyalthia cerasoides and their Molecular Interaction Studies. Current Drug Discovery Technologies, 19(5), 78-85.
    DOI: https://doi.org/10.2174/1570163819666220511154837

  13. Bhardwaj, A., Sapra, L., Saini, C., Azam, Z., Mishra, P.K., Verma, B.,Mishra GC, Srivastava R.K. (2022). COVID-19: immunology, immunopathogenesis and potential therapies. International reviews of immunology 2022 Feb 21;41(2):171-206
    DOI: 10.1080/08830185.2021.1883600

  14. Pandey, K.K., Madhry, D., Ravi Kumar Y.S., Malvankar, S., Sapra, L., Srivastava, R., Bhattacharyya, S., and Verma, B (2021). Regulatory roles of tRNA-derived RNA fragments in human pathophysiology. Molecular Therapy- Nucleic Acids, 26, 161-173.
    DOI: https://doi.org/10.1016/j.omtn.2021.06.023

  15. Madhrey, D., Pandey, K,K., Kaur, J., Rawat, Y., Sapra, Y., Ravikumar Y. S., Srivastava, R., Bhattacharyya, S., and Verma, B (2021). Role of non-coding RNAs in Dengue virus-host interaction. Frontiers in Bioscience. 13 (1), 44–55.
    DOI: https://doi.org/10.52586/S552

  16. Sapra, L., Bhardwaj, A., Azam, Z., Madhry, D., Verma, B., Rathore S, Srivastava RK. (2021). Phytotherapy for treatment of cytokine storm in COVID-19. Frontiers In Bioscience, Landmark.. 2021 Apr 30;26(5):51-75
    DOI: https://doi.org/10.52586/4924

  17. Verma, B., Akinyi, M., Norppa, A., and Frilander, M. J. (2018). Minor splicing and diseases. Seminar in Cell and Developmental Biology, 79, 103-112.
    DOI: https://doi.org/10.1016/j.semcdb.2017.09.036

  18. Norppa, A., Kauppala, T.M., Heikkinen, H.A., Verma B, Iwai, H. and Frilander, M. J. (2018). Mutations in the U11/U12-65K protein associated with isolated growth hormone deficiency lead to structural destabilization and impaired binding of U12 snRNA. RNA, 24(3), 396-409.
    DOI: 10.1261/rna.062844.117

  19. Verbeeren, J., Verma, B., Niemela, EH., Yap, K., Makeyev, EV., and Frilander, MJ. (2017) Alternate 3’-terminal exon definition events control the choice between retention of U11/U12-65K mRNA in the nucleus and its export to the cytoplasm. PLOS Genetics. 13, e1006824.
    DOI: https://doi.org/10.1371/journal.pgen.1006824

  20. Argente, J., Flores, R., Gutiérrez-Arumí, A≠., Verma, B≠., Martos-Moreno, G.A., Cuscó, I., Oghabian, A., Chowen, J.A., Frilander, M.J., and Pérez-Jurado, L.A. (2014). Defective minor spliceosome mRNA processing results in isolated familial growth hormone deficiency. EMBO Molecular Medicine. 6 (3), 299-306.
    DOI: https://doi.org/10.1002/emmm.201303573
    (≠ Equal contribution).

  21. Turunen, J. J., Verma, B., Nyman, T. A., & Frilander, M. J. (2013). HnRNPH1/H2, U1 snRNP, and U11 snRNP cooperate to regulate the stability of the U11-48K pre-mRNA. RNA, 19(3), 380-389.
    DOI: 10.1261/rna.036715.112

  22. Turunen, J. J., Niemelä, E. H., Verma, B., & Frilander, M. J. (2013). The significant other: splicing by the minor spliceosome. Wiley Interdisciplinary Reviews: RNA, 4(1), 61-76.
    DOI: 10.1002/wrna.1141

  23. Verma, B., Ponnuswamy, A., Gnanasundram, S.V. and Das, S. (2011). Cryptic AUG is important for 48S ribosomal assembly during internal initiation of Coxsackievirus B3 RNA. Journal of General Virology. 92, 2310 - 2319.
    DOI: https://doi.org/10.1099/vir.0.032151-0

  24. Verma, B., Bhattacharyya, S. and Das, S. (2010). Polypyrimidine tract binding protein interacts with Coxsackievirus B3 RNA and influences its translation. Journal of General Virology. 91, 1245-1255.
    DOI: https://doi.org/10.1099/vir.0.018507-0

  25. Bhattacharyya, S1.,Verma, B1., Pandey, G. and Das, S. (2008). The structure and function of a cis-acting element located upstream of the IRES that influences Coxsackievirus B3 RNA translation. Virology. 377(2):345-354 (Joint first author).
    DOI: https://doi.org/10.1016/j.virol.2008.04.019

 Book Chapters/Newsletters/Blogs

  1. Roy, R., Singh, K., and Verma, B (2024). RNA Therapeutics: A New Frontier in Cancer Immunotherapy. Immune Connect; Indian Immunological Society (IIS) 2nd Newsletter.

  2. Sinha, S., Phadnis, S., Roy, R., Singh, K., and Verma, B (2023). Immunotherapeutics & Viral Infections: Advances and Key Challenges (invited review). Immune Connect; Indian Immunological Society (IIS) 1st Newsletter.

  3. Meena, V., Sinha, S., and Verma, B (2022). Role of small non-coding RNAs in Reproductive Health (invited review). Indian Society for Study of Reproduction and Fertility (ISSRF) 28th Newsletter (ISSN # 2395-2806).

  4. Madhrey, D., Pandey, K. K., Malvankar, S., Kumar, S., Singh, A., Ravikumar Y. S., Srivastava, R., and Verma, B (2021). Various Transcriptomic approaches & their applications to study small non-coding RNAs in Dengue and other viruses. Book Chapter in press (Springer Nature book titled "Integrated-omics approaches to infectious disease")

  5. Singh, A., Malvankar, S., Pandey, K.K., Kumar, S., Srivastava, R., and Verma, B. (2021). Transcriptomics Approaches To Study Role Of Ncrnas In Reproductive Health (invited review). Indian Society for Study of Reproduction and Fertility (ISSRF) 27th Newsletter (ISSN # 2395-2806).

  6. Malvankar, S., Madhrey, D., and Verma, B (2020). Nano-delivery of small non-coding RNA as a therapeutic approach to treat Reproductive Diseases (invited review). Indian Society for Study of Reproduction and Fertility (ISSRF) 25th Newsletter (ISSN # 2395-2806).

  7. Madhrey, D., Ravikumar Y. S. and Verma, B (2019). tRNA derived RNA fragments: ncRNAs and reproductive health, (invited review). Indian Society for Study of Reproduction and Fertility (ISSRF) 24th Newsletter (2019, Sep., 24, 52-54), (ISSN # 2395-2806).

  8. Invited blog article in Nature India (April 2013).
    Away from home: Coping with Northern lights & darkness: Blog talking about my own scientific research and life as a postdoctoral researcher in Finland. url: http://blogs.nature.com/indigenus/2013/04/away-from-home-coping-with-northern-lights-darkness.html



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